- Seminarleiter: Purva Kulkarni
- Termin: Di 16-18h, SR 3423 EAP
Im Journal Club wird wöchentlich ein aktueller Artikel aus der bioinformatischen Forschung vorgestellt und diskutiert.
Details werden in der ersten Veranstaltung besprochen.
Vorläufiger Ablaufplan
| Date | Paper | Presenter and Backup |
| 04.04 | Organisatorisches, Besprechen der Themen | Purva |
| 12.04 | How to read a scientific paper? | Sebastian |
| 19.04 | Nicholas W. Kwiecien†‡, Derek J. Bailey†‡, Matthew J. P. Rush†‡, Jason S. Cole§, Arne Ulbrich†‡, Alexander S. Hebert†, Michael S. Westphall†, and Joshua J. Coon High-Resolution Filtering for Improved Small Molecule Identification via GC/MS Anal. Chem., 2015, 87 (16), pp 8328–8335 |
Franzi |
| 26.04 | André C. A. NascimentoEmail author, Ricardo B. C. Prudêncio and Ivan G. Costa A multiple kernel learning algorithm for drug-target interaction prediction BMC Bioinformatics, 2016, 17:46 DOI: 10.1186/s12859-016-0890-3 |
Marcus |
| 03.05 | Michael Hanselmann, Ullrich Köthe, Marc Kirchner, Bernhard Y. Renard, Erika R. Amstalden, Kristine Glunde§, Ron M. A. Heeren and Fred A. Hamprecht Toward Digital Staining using Imaging Mass Spectrometry and Random Forests J. Proteome Res., 2009, 8 (7), pp 3558–3567 DOI: 10.1021/pr900253y |
Daniel and Purva |
| 10.05 | Simona Constantinescu1,2, Ewa Szczurek1,2, Pejman Mohammadi1,2, Jörg Rahnenführer3 and Niko Beerenwinkel1,2 TiMEx: a waiting time model for mutually exclusive cancer alterations Bioinformatics (2016) 32 (7): 968-975. |
Florian and Tim |
| 17.05 | Grzegorz Mrukwa, Grzegorz Drazek, Monika Pietrowska, Piotr Widlak, Joanna Polanska A Novel Divisive iK-Means Algorithm with Region-Driven Feature Selection as a Tool for Automated Detection of Tumour Heterogeneity in MALDI IMS Experiments Bioinformatics and Biomedical Engineering Volume 9656 of the series Lecture Notes in Computer Science pp 113-124 |
Bastian and Purva |
| 24.05 | Robin Genuer, Jean-Michel Poggi and Christine Tuleau-Malot VSURF: An R Package for Variable Selection Using Random Forests CONTRIBUTED RESEARCH ARTICLES, R Project |
Anna and Eudes |
| 31.05 | Dries Verdegem, Diether Lambrechts, Peter Carmeliet, Bart Ghesquiere Improved metabolite identification with MIDAS and MAGMa through MS/MS spectral dataset-driven parameter optimization Metabolomics (2016) 12:98, DOI 10.1007/s11306-016-1036-3 |
Kai |
| 07.06 | Nam-phuong D. Nguyen, Siavash Mirarab, Keerthana Kumar and Tandy Warnow Ultra-large alignments using phylogeny-aware profiles Genome Biology2015, 16:124 |
Ruman and Markus |
| 14.06 | Cancelled | |
| 21.06 | Julian R Marchesi1,2, David H Adams3, Francesca Fava4, Gerben D A Hermes, Gideon M Hirschfield3, Georgina Hold7, Mohammed Nabil Quraishi3, James Kinross8, Hauke Smidt5, Kieran M Tuohy4, Linda V Thomas9, Erwin G Zoetendal5,6, Ailsa Hart10 The gut microbiota and host health: a new clinical frontier Gut 2016;65:330-339 |
Marvin |
| 28.06 | Cancelled | |
| 05.07 | Michael E. Kurczy1, Julijana Ivanisevic1, Caroline H. Johnson1, Winnie Uritboonthai1, Linh Hoang1, Mingliang Fang1, Matthew Hicks1, Anthony Aldebot1, Duane Rinehart1, Lisa J. Mellander2, Ralf Tautenhahn1, Gary J. Patti3,4, Mary E. Spilker5, H. Paul Benton1 and Gary Siuzdak Determining conserved metabolic biomarkers from a million database queries Bioinformatics (2015) 31 (23): 3721-3724. doi: 10.1093/bioinformatics/btv475 |
Moritz and Purva |
Additional papers:
- Aleksandra Skirycz, Sylwia Kierszniowska, Michaël Méret, Lothar Willmitzer, George Tzotzos
Medicinal Bioprospecting of the Amazon Rainforest: A Modern Eldorado?
Trends in Biotechnology, Cell Press, Available online 21 April 2016 - Isidro Cortes‑Ciriano
Bioalerts: a python library for the derivation of structural alerts from bioactivity and toxicity data sets
Cortes‑Ciriano J Cheminform (2016) 8:13 - Andrés M. Castillo, Andrés Bernal, Reiner Dieden, Luc Patiny and Julien Wist
“Ask Ernö”: a self-learning tool for assignment and prediction of nuclear magnetic resonance spectra
Journal of Cheminformatics 2016 8:26 DOI: 10.1186/s13321-016-0134-6