© Kai Dührkop and Marvin Meusel and Markus Fleischauer and Marcus Ludwig.
http://bio.informatik.uni-jena.de/software/sirius/

SIRIUS is licenced under the terms of the GNU General Public License (GPL) version 3 as published by the Free Software Foundation.

When using SIRIUS please cite the following papers:

Kai Dührkop and Sebastian Böcker
Fragmentation trees reloaded.
In Proc. of Research in Computational Molecular Biology (RECOMB 2015), volume 9029 of Lect Notes Comput Sci, pages 65-79. 2015. [doi]

Sebastian Böcker, Matthias Letzel, Zsuzsanna Lipták and Anton Pervukhin
SIRIUS: Decomposing isotope patterns for metabolite identification.
Bioinformatics, 25(2):218-224, 2009. [doi]

Sebastian Böcker and Florian Rasche
Towards de novo identification of metabolites by analyzing tandem mass spectra.
Bioinformatics, 24:I49-I55, 2008. Proc. of European Conference on Computational Biology (ECCB 2008). [doi]


When using CSI:FingerID please cite the following papers:

Kai Dührkop, Huibin Shen, Marvin Meusel, Juho Rousu and Sebastian Böcker
Searching molecular structure databases with tandem mass spectra using CSI:FingerID.
Proc Natl Acad Sci U S A, 112(41):12580-12585, 2015. [doi]

Huibin Shen, Kai Dührkop, Sebastian Böcker and Juho Rousu
Metabolite Identification through Multiple Kernel Learning on Fragmentation Trees.
Bioinformatics, 30(12):i157-i164, 2014. Proc. of Intelligent Systems for Molecular Biology (ISMB 2014). [doi]

Markus Heinonen, Huibin Shen, Nicola Zamboni and Juho Rousu
Metabolite identification and molecular fingerprint prediction through machine learning
Bioinformatics (2012) 28 (18): 2333-2341.Proc. of European Conference on Computational Biology (ECCB 2012). [doi]