SIRIUS and CSI:FingerID user manual
"The SIRIUS manual is a treasure — in fact, I would go so far as to call it entertaining."
Corey D. Broeckling, Colorado State University
Download the SIRIUS and CSI:FingerID manual here; a copy is also shipped with your SIRIUS installation.
Tutorial by Louis Nothias-Scaglia on how to use SIRIUS/CSI:FingerID as part of an Optimus (OpenMS) – SIRIUS/CSI:FingerID – GNPS Trinity workflow.
Is running Java a security problem?
Only if you enable execution of Java programs in your web browser. Today, there is practically no need to run Java from the browser, so you should disable this option (it is probably disabled already). Always keep your JRE up-to-date.
I am running Windows and I get an error message, `ERROR: JAVA_HOME is set to an invalid directory'.
Probably, deleting the JAVA_HOME environment variable will solve the problem, see the instructions for the PATH variable above.
I want to run SIRIUS on Windows XP!
Don't. Running Windows XP on a computer connected to the internet is a security hazzard.