Blast Viewer

UPDATE: This version of the blast viewer is no longer maintained. The Blast Viewer is contained in the full Epos Framework. Please consider using the full framework to get the current version of the Blast Viewer. The Blast Viewer is located at the right side of the main toolbar. Note that with the full version you can also load your sequences and blast them directly against the NCBI, create your own Blast databases, and directly import hits.

blastappTo demonstrate the ability to create standalone applications on top of the epos framework, we implemented the epos blast viewer. You can import NCBI Blast results in XML format to view the hits. Currently the viewer is able to create the standard NCBI blast alignment output and export the results as CSV file. You can also directly download and save the sequences. In the standalone app, you can only save the downloaded sequences to a file (i.e. in fasta format). The same application will also be embedded as a tool in the next Epos release. This allows you to directly import the sequences into the epos database.

Feel free to play around and do not hesitate to contact us if you have trouble or if you are missing any features.

Here is a demo blast result that you can use to get started (try right click save as if it just displays the file in your browser).

The blastviewer is currently deployed as Java Webstart application. Unfortunatly we have to specify a memory limit on startup and we can not automatically determine how much memory is available on your machine. Please choose the appropriate version (from 1 to 4 Gigabyte of memory) below. Depending on your environment the tool might not start up. In this situation please choose a version with less memory.

1G memory
2G memory
4G memory

For the following two options you need a 64bit machine with a 64 bit Java plugin.

6G memory (64bit)
8G memory (64bit)

33 Comments

  1. Sergi says:

    Wow!

    What a great application!

    I had been looking for something like this a couple of months ago and could not find it! Today I found it by chance but it seems you are positioning better in Google.

    Keep up the good work,

    Sergi

  2. Ginnie says:

    Awesome! Love it!

  3. Martina says:

    schöner Blog mit tollen Infos!

  4. I wanted to thank you for this excellent read!! I certainly enjoyed every little bit of it. I’ve got you saved as a favorite to look at new things you post…

  5. Thanks a bunch for sharing this with all folks you really understand what you’re
    speaking about! Bookmarked. Please also talk over with my site
    =). We could have a link change arrangement between us

  6. Today, while I was at work, my cousin stole my iphone and tested to see if it can survive a
    twenty five foot drop, just so she can be a youtube sensation.
    My iPad is now destroyed and she has 83 views.
    I know this is completely off topic but I had
    to share it with someone!

  7. onet says:

    Wow, superb blog layout! How long have you been blogging for? you compose blogging look laid-back. The largely glare of your site is fantastic, assent to single-handedly the content!

  8. Sinus Infection Home Remedy An exciting discussion is unquestionably worth comment. I really believe that you just should produce more with this subject matter it could not be a taboo subject but typically people don’t speak about these issues. To the next! Cheers!!

  9. If not one person was home, what then, i stumbled upon it weird nonetheless they can hardly ever alerted me about the transporting status or development, they only started out it, what? Anyway, I’m thankful I bought it, thank you for your answers, they were very useful, I don`t know if I would get this if no person responded to.

  10. Discover because place, Apologies. Try and acquire right now there. Best associated with good luck for your requirements.|There isn’t any correct way to be able to experience the actual pastime, creating a partner, or perhaps your particular human issue.|So rather than declaring alter your way of sensation, I would like to question what number of alternatives do you possess? What if you don’t ever meet up with a woman to be able to meet up with? |Imagine if you merely enable people surrounding you understand that you want to meet somebody? Do you consider an individual would likely set anyone up, perhaps not with the woman you’ve always dreamed of, however with somebody that therefore might tell you about brand-new individuals?|Disappointment is just a strategy for figuring out you are always in existence. I really we imagine you settle your differences, however begin with attempting to accept that you might be lonesome knowning that there’s nothing so unconventional in regards to the experience, and positively it’s not at all Drastically wrong for you to experience whatever you sense.

  11. I relocated to Richmond 2 days ago and tried to locate some Richmond escorts to have pleasurable with. I managed to do a homework on certain discussion community forums and Richmond escort sites like TER, Naughty Reviews, Bigdoggie and the a large number of useful for me and efficiently ratings were Richmond escort from City Girls. Anybody has any working experience with these folks? Their prices are a little bit of more in comparison to I would certainly feel to pay and what I commonly pay out, but after getting pair of females from Backpage paying 150, I would most likely like possibly sometimes to pay excessive price, but get superior quality. Just what you boys feel? link http://www.theeroticreview.com/discussion_boards/viewMsg.asp?BoardID=91&MessageID=10051

  12. Michele says:

    Thank you for any other informative website. Where else may just I
    am getting that kind of info written in such an ideal method?
    I have a undertaking that I am just now operating on,
    and I have been on the glance out for such info.

  13. Johne740 says:

    Hello my family member! I want to say that this article is amazing, great written and come with almost all significant infos. Id like to peer extra posts like this . kdeabdddcefd

  14. e cig review Epos » Blast Viewer

  15. EARN RS.30,000-RS.100,000 MONTHLY BY GIVING HOT SERVICE TO OUR FEMALE CUSTOMER. WE RECRUIT SMART AND YOUNG MALE ESCORT FROM ALL MEGA CITIES OF INDIA.Call Roshni: 07029214808(Karnataka, Kerala, Maharashtra) ,Neha: 07866922985(Punjab,Bangalore) ,Nitu: 07865019912 (Delhi, Chandigarh, Haryana) ,Sanjana: 09749487201(MP,UP,TN) ,Sneha: 07679413022 (Goa,Gujrat,Rajasthan) ,Rosy: 08509359931(Rest of India). or login to http://maleentertainer4vips.com/

  16. pinterest says:

    Most Facebook users are teenagers who do not have a lot of money to spend.
    If you like something from other people’s board you can “re-pin” it
    to your own. There are different ways on getting invited to Pinterest.

  17. Anonymous says:

    Menos mal que hay alguien que habla claro de este tema…. aveces se dan muchas vueltas para explicar cualquier g

  18. I think tthe admin of this sikte is genuinely working hard
    for his web page, ass herre every data is quality based data.

    my blog games to play at home

  19. I like reading a post that will make men and women think.
    Also, many thanks for permitting me to comment!

  20. Lyndon says:

    Pregnant Ellie Kardashian put her baby-bump in Los Angeles March 22, 2013, under a giant black
    blouse during lunch together with her friend Antin. 6 event during Craft Miami Beach,
    where West was a featured speaker

    Also visit my web-site phen375 discount coupon –
    Lyndon,

  21. gestapo says:

    How do i start a blog? Are there any websites that can provide step by step directions?

  22. As a digital designer, I spend a lot of time working within the design and development of e-commerce platforms.

  23. Franklin says:

    Core belly train might be good not just on your look, but in addition in your well being.

  24. my Site says:

    I’m really enjoying the theme/design of your site. Do
    you ever run into any internet browser compatibility
    issues? A couple of my blog audience have complained about my site not working correctly in Explorer
    but looks great in Opera. Do you have any advice to help fix
    this problem?

  25. MSG 91 SMS says:

    Thanks for sharing this Post, Keep Updating such topics.
    jeepininmidwest

  26. smith says:

    Thanks for sharing this post, great post.

  27. Nice information i like To visite Your Site again and again thatnks for that valuable information. x watch siona

  28. thanks for this info. It is just like a bomber man but good.

  29. Hair Extensions

    Epos » Blast Viewer

  30. Hong Kong Free Press HKFP

    blog topic

Leave a Reply