Currents in Bioinformatics

  • Letztmalig/aktuell im SoSe 2024
  • Nächste Instanz geplant im WiSe 2024/25
  • Seminarleitung: Jonas Emmert
  • Seminarort: SR 3423 EAP2
  • Dienstag 16:15-17:45 Uhr
  • Beginn: 02.04.2024
  • Weitere Infos im Moodle
02.04.2024 Organisatorisches
02.04.2024 Wie liest man ein Paper?
  Vorstellung Paper X
  Abgabe Deadline für Abstracts

“Live” Paper

  1. MixMatch: A Holistic Approach to Semi-Supervised Learning https://arxiv.org/abs/1905.02249
  2. Categorical Deep Learning: An Algebraic Theory of Architectures https://arxiv.org/abs/2402.15332
  3. Combined LC-MS/MS feature grouping, statistical prioritization, and interactive networking in msFeaST https://doi.org/10.26434/chemrxiv-2024-h7sm8
  4. Enabling pan-repository reanalysis for big data science of public metabolomics data https://doi.org/10.26434/chemrxiv-2024-jt46s
  5. Invalid SMILES are beneficial rather than detrimental to chemical language models https://doi.org/10.1038/s42256-024-00821-x
  6. Interpolation consistency training for semi-supervised learning https://arxiv.org/ftp/arxiv/papers/1903/1903.03825.pdf
  7. Problem choice and decision trees in science and engineering https://doi.org/10.1016/j.cell.2024.03.012
  8. Molecular structure discovery for untargeted metabolomics using biotransformation rules and global molecular networking https://doi.org/10.1101/2024.02.04.578795
  9. A principal odor map unifies diverse tasks in olfactory perception https://www.science.org/doi/10.1126/science.ade4401

Paperliste

  1. Predicting the Activity of Unidentified Chemicals in Complementary Bioassays from the HRMS Data to Pinpoint Potential Endocrine Disruptors https://pubs.acs.org/doi/10.1021/acs.jcim.3c02050 (hierzu auch das CANOPUS Paper lesen: https://doi.org/10.1038/s41587-020-0740-8)
  2. The underappreciated diversity of bile acid modifications https://doi.org/10.1016/j.cell.2024.02.019
  3. The changing metabolic landscape of bile acids – keys to metabolism and immune regulation https://doi.org/10.1038/s41575-024-00914-3 (possibly join this and nr. 2)
  4. Controlled experiment finds no detectable citation bump from Twitter promotion https://doi.org/10.1371/journal.pone.0292201


A-List

Material