Proseminar Bioinformatik

  • Seminarleitung: Franziska Hufsky
  • Termin: Mi 12:15 – 13:45 Uhr
  • Ort: R 3423 EAP2

Vorläufiger Terminplan

Folien und Abstract bitte bis Montag vor dem Vortrag per email an einen der Verantwortlichen senden.

Termin Thema Vortragende(r)
09.04. Vorbesprechung
16.04. Einführung: Wissenschaftliche Vorträge halten
23.04. fällt aus
30.04. Einführung: Wissenschaftliche Paper lesen
07.05. Journal Club
14.05. Algorithms in nature Marie
21.05. Computational mass spectrometry for small molecule fragmentation Roberta
28.05. Protein-protein interactions Alexandra
04.06. Phylogenomics and the reconstruction of the tree of life Robert
11.06. The evolution and future of supertrees Bastian
18.06. RNA and protein structure modelling Ruman
25.06. Machine learning in bioinformatics Tobias
02.07. Einführung: Wissenschaftliche Poster gestalten


Journal Club:

Wolf, S.; Schmidt, S.; Müller-Hannemann, M. & Neumann, S.
In silico fragmentation for computer assisted identification of metabolite mass spectra.
BMC Bioinformatics, 11: 148, 2010.

Review Paper zu den Vortragsthemen:

Navlakha, S. & Bar-Joseph, Z.
Algorithms in nature: The convergence of systems biology and computational thinking.
Mol Syst Biol, 7: 546, 2011.

Hufsky, F.; Scheubert, K. & Böcker, S.
Computational mass spectrometry for small molecule fragmentation.
Trends Anal Chem, 53: 41-48, 2014.

Phizicky EM & Fields S.
Protein-protein interactions: methods for detection and analysis.
Microbiol Rev, 59(1):94-123, 1995.

Delsuc, F.; Brinkmann, H. & Philippe, H.
Phylogenomics and the reconstruction of the tree of life.
Nat Rev Genet, 6: 361-375, 2005.

Bininda-Emonds, O. R. P.
The evolution of supertrees
Trends Ecol Evol, 19: 315-322, 2004.

Bininda-Emonds, O. R. P.
The future of supertrees: Bridging the gap with supermatrices
Proc. of Willi-Hennig-Symposium 2009, Palaeodiversity 3, Supplement: 99-106, 2010.

Laing, C. & Schlick, T.
Computational approaches to RNA structure prediction, analysis, and design.
Curr Opin Struct Biol, 21: 306-318, 2011.

Rother K., Rother M., Boniecki M., Puton T., Bujnicki JM.
RNA and protein 3D structure modeling: similarities and differences.
J Mol Model, 17(9):2325-36, 2011.

Larrañaga P., Calvo B., Santana R., Bielza C., Galdiano J., Inza I., Lozano J.A., Armañanzas R., Santafé G., Pérez A., Robles V.
Machine learning in bioinformatics.
Brief Bioinform, 7(1):86-112, 2006.

Weitere Literatur

  • E. Collins, How to read a scientific article
  • E. Messerschmidt, Pointers on giving a talk
  • Mark D. Hill, Oral presentation advice (1997)
  • Ian Parberry, How to present a paper in theoretical computer science: a speaker’s guide for students (2000)
  • Spencer Rugaber, How to read a research paper