Currents in Bioinformatics

  • Seminarleiter: Purva Kulkarni
  • Termin: Di 16-18, SR 3423 EAP

Im Journal Club wird wöchentlich ein aktueller Artikel aus der bioinformatischen Forschung vorgestellt und diskutiert.
Details werden in der ersten Veranstaltung besprochen.

Termin Thema Vortragender Backup
14.04  Organisatorisches, Besprechen der Themen  –
21.04  (No journal club held)  –
28.04 Fomin, F., Grandoni, F., and Kratsch, D.  2005.
Measure and conquer: Domination — a case study
In Proceedings of the International Colloquium on Automata, Languages and Programming (ICALP).  Lecture Notes in Computer Science, vol. 3580, Springer-Verlag, Berlin, Germany, 191–203.
Tim
05.05 Jiyan Yang, Oliver Rübel, Prabhat, Michael W. Mahoney, and Benjamin P. Bowen
Identifying Important Ions and Positions in Mass Spectrometry Imaging Data Using CUR Matrix Decompositions
Anal. Chem., Article ASAP, DOI: 10.1021/ac5040264
Purva
12.05 David Rogers and Mathew Hahn
Extended-Connectivity Fingerprints
J. Chem. Inf. Model., 2010, 50 (5), pp 742–754, DOI: 10.1021/ci100050t
Marcus
19.05 Kerem Bingol, Lei Bruschweiler-Li, Cao Yu, Arpad Somogyi, Fengli Zhang, and Rafael Brüschweiler
Metabolomics Beyond Spectroscopic Databases: A Combined MS/NMR Strategy for the Rapid Identification of New Metabolites in Complex Mixtures
Anal. Chem., 2015, 87 (7), pp 3864–3870, DOI: 10.1021/ac504633z
Franzi
26.05 Qiang Wu, Chris J.C. Burges, Krysta M. Svore and Jianfeng Gao
Ranking, Boosting, and Model Adaptation
Microsoft Research Technical Report MSR-TR-2008-109, October 15, 2008
Martin H.  Marcus
02.06  Rob Gysel, Dan Gusfield, Kristian Stevens
Triangulation Heuristics for Maximum Character Compatibility
IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2013, DOI: 10.1109/ICCABS.2013.6629217Rob Gysel, Fumei Lam and Dan Gusfield
Constructing perfect phylogenies and proper triangulations for three-state characters
Algorithms for Molecular Biology 2012, doi:10.1186/1748-7188-7-26
Markus
09.06 Uri Keich, Ming Li, Bin Ma, John Tromp
On Spaced Seeds for Similarity Search
Kerstin and Marcus
16.06 Benjamin Buchfink, Chao Xie & Daniel H Huson
Fast and sensitive protein alignment using DIAMOND
Nature Methods 12, 59–60 (2015) doi:10.1038/nmeth.3176
Sarah Franzi
23.06 Martin Loos, Christian Gerber, Francesco Corona, Juliane Hollender, and Heinz Singer
Accelerated Isotope Fine Structure Calculation Using Pruned Transition Trees
Anal. Chem.,DOI: 10.1021/acs.analchem.5b00941
 Julien Tim
30.06 Dante A. Pertusi, Andrew E. Stine, Linda J. Broadbelt and Keith E.J. Tyo
Efficient searching and annotation of metabolic networks using chemical similarity
Bioinformatics (2015) 31 (7): 1016-1024. doi: 10.1093/bioinformatics/btu760
Bertram
07.07 Vassily Hatzimanikatis, Chunhui Li, Justin A. Ionita, Christopher S. Henry, Mathew D. Jankowski & Linda J. Broadbelt
Exploring the diversity of complex metabolic networks
Bioinformatics(2004) 21(8): 1603-1609. doi: 10.1093/bioinformatics/bti213
Kai
14.07 Eric M. Woerly, Jahnabi Roy and Martin D. Burke
Synthesis of most polyene natural product motifs using just 12 building blocks and one coupling reaction
Nature Chemistry 6, 484–491 (2014) doi:10.1038/nchem.1947
Robert F. Service
The synthesis machine
Science, Vol. 347 no. 6227 pp. 1190-1193, Mar 2015, DOI: 10.1126/science.347.6227.119
Junqi Li, Steven G. Ballmer, Eric P. Gillis, Seiko Fujii, Michael J. Schmidt, Andrea M. E. Palazzolo, Jonathan W. Lehmann, Greg F. Morehouse, Martin D. Burke
Synthesis of many different types of organic small molecules using one automated process
Science, , Vol. 347 no. 6227 pp. 1221-1226, Mar 2015, DOI: 10.1126/science.aaa5414
Sebastian