- Seminarleiter: Thomas Köhler
- Termin: Di 16-18h, SR 3423 EAP
- Beginn: 10.04.2018
Im Journal Club wird wöchentlich ein aktueller Artikel aus der bioinformatischen Forschung vorgestellt und diskutiert.
Details werden in der ersten Veranstaltung besprochen.
Vorläufiger Ablaufplan
| Date | Paper | Presenter and Backup |
| 10.04. | Organisatorisches, Besprechen der Themen | Martin |
| 17.04. | How to read a scientific paper? | Sebastian |
| 24.04. | Bayesian selection of misspecified models is overconfident and may cause spurious posterior probabilities for phylogenetic trees | Marcus |
| 01.05 | 1. Mai Feiertag | |
| 08.05 | Outlier detection in BLAST hit | volunteer 1 |
| 15.05 | Dark matter in host-microbiome metabolomics: Tackling the unknowns–A review | volunteer 2 |
| 22.05 | Mordred: a molecular descriptor calculator | thomas |
| 29.05 | Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets. | volunteer 3 |
| 12.06 | Molecular graph convolutions: moving beyond fingerprints | volunteer 4 |
| 19.06 | Target-Decoy-Based False Discovery Rate Estimation for Large-Scale Metabolite Identification | Martin |
| 26.06 | Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors | Kai |
| 03.07 | Guiding biomedical clustering with ClustEval | Markus |
List of papers:
-
-
-
- Nidhi Shah, Stephen F. Altschul and Mihai Pop
Outlier detection in BLAST hit - Sahely Bhadra, Peter Blomberg, Sandra Castillo, Juho Rousu
Principal Metabolic Flux Mode Analysis - Anna Cichonska, Balaguru Ravikumar, Elina Parri, Sanna Timonen, Tapio Pahikkala, Antti Airola, Krister Wennerberg, Juho Rousu, Tero Aittokallio
Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors - Andreas Kuehne, Urs Mayr, Daniel C. Sévin, Manfred Claassen, Nicola Zamboni
Metabolic network segmentation: A probabilistic graphical modeling approach to identify the sites and sequential order of metabolic regulation from non-targeted metabolomics data - L Peisl, EL Schymanski, P Wilmes
Dark matter in host-microbiome metabolomics: Tackling the unknowns–A review - Alexander A. Aksenov, Ricardo da Silva, Rob Knight, Norberto P. Lopes & Pieter C. Dorrestein
Global chemical analysis of biology by mass spectrometry - Hirotomo Moriwaki,Yu-Shi Tian, Norihito Kawashita and Tatsuya Takagi
Mordred: a molecular descriptor calculator - Steven Kearnes, Kevin McCloskey, Marc Berndl, Vijay Pande, Patrick Riley
Molecular graph convolutions: moving beyond fingerprints - Feng Qiu, Zhentian Lei, Lloyd W. Sumner
MetExpert: An expert system to enhance gas chromatography‒mass spectrometry-based metabolite identifications - DK Barupal, S Fan, O Fiehn
Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets. - Ziheng Yang and Tianqi Zhu
Bayesian selection of misspecified models is overconfident and may cause spurious posterior probabilities for phylogenetic trees - Saer Samanipour, Malcolm J. Reid, Kine Bæk and Kevin V. Thomas
Combining a Deconvolution and a Universal Library Search Algorithm for the Nontarget Analysis of Data-Independent Acquisition Mode Liquid Chromatography−High-Resolution Mass Spectrometry Results - Ricardo R. da Silva, Mingxun Wang, Louis-Félix Nothias, Justin J. J. van der Hooft, Andrés Mauricio Caraballo-Rodríguez, Evan Fox, Marcy J. Balunas, Jonathan L. Klassen, Norberto Peporine Lopes, Pieter C. Dorrestein
Propagating annotations of molecular networks using in silico fragmentation - Louis J. Cohen et al.
Commensal bacteria make GPCR ligands that mimic human signalling molecules - Christian Wiwie, Jan Baumbach & Richard Röttger
Guiding biomedical clustering with ClustEval - Xusheng Wang, Drew R. Jones, Timothy I. Shaw, Ji-Hoon Cho, Yuanyuan Wang, Haiyan Tan, Boer Xie, Suiping Zhou, Yuxin Li and Junmin Peng
Target-Decoy-Based False Discovery Rate Estimation for Large-Scale Metabolite Identification
- Nidhi Shah, Stephen F. Altschul and Mihai Pop
-
-