- Seminarleiter: Purva Kulkarni
- Termin: Di 16-18h, SR 3423 EAP
Im Journal Club wird wöchentlich ein aktueller Artikel aus der bioinformatischen Forschung vorgestellt und diskutiert.
Details werden in der ersten Veranstaltung besprochen.
Vorläufiger Ablaufplan
| Date | Paper | Presenter |
| 20.10 | Organisatorisches, Besprechen der Themen | – |
| 27.10 | Lukas Käll, Jesse D Canterbury, Jason Weston, William Stafford Noble & Michael J MacCoss Semi-supervised learning for peptide identification from shotgun proteomics datasets Nature Methods – 4, 923 – 925 (2007), doi:10.1038/nmeth1113Viktor Granholm, Sangtae Kim, José C. F. Navarro, Erik Sjölund, Richard D. Smith, and Lukas Käll Fast and Accurate Database Searches with MS-GF+Percolator J. Proteome Res., 2014, 13 (2), pp 890–897, doi: 10.1021/pr400937n |
Marcus |
| 3.11 | Sara Forcisi, Franco Moritz, Marianna Lucio, Rainer Lehmann, Norbert Stefan, and Philippe Schmitt-Kopplin Solutions for Low and High Accuracy Mass Spectrometric Data Matching: A Data-Driven Annotation Strategy in Nontargeted Metabolomics Anal. Chem., 2015, 87 (17), pp 8917–8924, doi:10.1021/acs.analchem.5b02049 |
Kai |
| 10.11 | Richard S. Barr, Bruce L. Golden, James P. Kelly, Mauricio G. C. Resende, William R. StewartJr. Designing and reporting on computational experiments with heuristic methods Journal of Heuristics, September 1995, Volume 1, Issue 1, pp 9-32, doi:10.1007/BF02430363 |
Tim |
| 17.11 | Presenting computational methods Discussion on FT and CSI:FingerID resultsKarin Kleigrewe, Jehad Almaliti, Isaac Yuheng Tian, Robin B. Kinnel, Anton Korobeynikov, Emily A. Monroe, Brendan M. Duggan, Vincenzo Di Marzo, David H. Sherman, Pieter C. Dorrestein, Lena Gerwick, and William H. Gerwick Combining Mass Spectrometric Metabolic Profiling with Genomic Analysis: A Powerful Approach for Discovering Natural Products from Cyanobacteria J. Nat. Prod., 2015, 78 (7), pp 1671–1682, doi: 10.1021/acs.jnatprod.5b00301 |
Sebastian
Bertram |
| 24.11 | Scientific Tuesday 10-min presentation by group members |
– |
| 01.12 | Theodore Alexandrov and Andreas Bartels Testing for presence of known and unknown molecules in imaging mass spectrometry Bioinformatics (2013) 29 (18):2335-2342. doi: 10.1093/bioinformatics/btt388 |
Purva |
| 08.12 | No journal club | |
| 15.12 | JCB Seminar Over the hedge: proteomics algorithms that could serve metabolomics |
Prof. Dr. Lennart Martens |
| 22.12 | No journal club (Weihnachts-/Silvesterpause) | |
| 29.12 | No journal club (Weihnachts-/Silvesterpause) | |
| 05.01 | No journal club | – |
| 12.01 | Anastasia V. Rudik, Alexander V. Dmitriev, Alexey A. Lagunin, Dmitry A. Filimonov, and Vladimir V. Poroikov Metabolism Site Prediction Based on Xenobiotic Structural Formulas and PASS Prediction Algorithm J. Chem. Inf. Model., 2014, 54 (2), pp 498–507, doi:10.1021/ci400472j |
Marvin |
| 19.01 | Md Shamsuzzoha Bayzid, Tyler Hunt, Tandy Warnow Disk covering methods improve phylogenomic analyses BMC Genomics 2014, 15(Suppl 6):S7 doi:10.1186/1471-2164-15-S6-S7 |
Markus |
| 26.01 | Tobias Petri, Stefan Altmann, Ludwig Geistlinger, Ralf Zimmer and Robert Küffner Addressing false discoveries in network inference Bioinformatics(2015) 31 (17): 2836-2843, doi: 10.1093/bioinformatics/btv215 |
Franzi |
| 02.02 | No journal club | |
| 09.02 | Eudes Barbosa, Richard Ro«ttger, Anne-Christin Hauschild, Vasco Azevedo and Jan Baumbach On the limits of computational functional genomics for bacterial lifestyle prediction Briefings in Functional Genomics(2014) 13 (5): 398-408 doi: 10.1093/bfgp/elu014 |
Eudes |