Currents in Bioinformatics

  • Letztmalig/aktuell im SoSe 2024
  • Nächste Instanz geplant im WiSe 2024/25
  • Seminarleitung: Jonas Emmert
  • Seminarort: SR 3423 EAP2
  • Dienstag 16:15-17:45 Uhr
  • Beginn: 02.04.2024
  • Weitere Infos im Moodle
02.04.2024 Organisatorisches
02.04.2024 Wie liest man ein Paper?
  Vorstellung Paper X
  Abgabe Deadline für Abstracts

“Live” Paper

  1. BitterMasS: Predicting Bitterness from Mass Spectra https://doi.org/10.1021/acs.jafc.3c09767
  2. MetaboAnalystR 4.0: a unified LC-MS workflow for global metabolomics https://doi.org/10.1038/s41467-024-48009-6
  3. Large teams develop and small teams disrupt science and technology https://doi.org/10.1038/s41586-019-0941-9
  4. Fiora: Local neighborhood-based prediction of compound mass spectra from single fragmentation events https://doi.org/10.1101/2024.04.22.590551
  5. Accurate structure prediction of biomolecular interactions with AlphaFold 3 https://doi.org/10.1038/s41586-024-07487-w
  6. Building Block Extractor: An MS/MS Data Mining Tool for Targeted Discovery of Natural Products with Specified Features https://doi.org/10.1021/acs.analchem.3c00744
  7. Efficient generation of open multi-stage fragmentation mass spectral libraries https://doi.org/10.26434/chemrxiv-2024-l1tqh

Paperliste

  1. Predicting the Activity of Unidentified Chemicals in Complementary Bioassays from the HRMS Data to Pinpoint Potential Endocrine Disruptors https://pubs.acs.org/doi/10.1021/acs.jcim.3c02050 (hierzu auch das CANOPUS Paper lesen: https://doi.org/10.1038/s41587-020-0740-8)
  2. The underappreciated diversity of bile acid modifications https://doi.org/10.1016/j.cell.2024.02.019
  3. The changing metabolic landscape of bile acids – keys to metabolism and immune regulation https://doi.org/10.1038/s41575-024-00914-3 (possibly join this and nr. 2)
  4. Controlled experiment finds no detectable citation bump from Twitter promotion https://doi.org/10.1371/journal.pone.0292201


A-List

Material