Theses

Ph.D.

Franziska Hufsky
Novel Methods for the Analysis of Small Molecule Fragmentation Mass Spectra.
PhD thesis, Friedrich-Schiller-Universität Jena, 2014.
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Malte Brinkmeyer
Polynomial Supertree Methods in Phylogenetics.
PhD thesis, Friedrich-Schiller-Universität Jena, 2013.
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Florian Rasche
Identification of Small Molecules using Mass Spectrometry: A fully automated pipeline proposing similar molecules and compound classes.
PhD thesis, Friedrich-Schiller-Universität Jena, 2013.
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Quang Bao Anh Bui
Fixed-parameter algorithms for some combinatorial problems in bioinformatics.
PhD thesis, Friedrich-Schiller-Universität Jena, 2010.
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Anton Pervukhin
Molecular Formula Identification using High Resolution Mass Spectrometry.
PhD thesis, Friedrich-Schiller-Universität Jena, 2009.
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M.Sc./Diplom

Marcus Ludwig
Improving Fragmentation Trees from Electron Ionization Mass Spectra using Isotope Information.
master thesis, Friedrich-Schiller-Universität Jena, 2014.
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Bertram Vogel
Improving FlipCut Supertrees with Posterior Probabilities and Suboptimal Source Trees.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2013.
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Antje Biering
Undisputed Siblings in FlipCut Supertrees.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2012.
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Kai Dührkop
A sparse dynamic programming algorithm for aligning fragmentation trees.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2012.
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Markus Fleischauer
Bessere Supertrees durch suboptimale Schnitte im FlipCut Graphen.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2012.
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Martin Hölzer
Datenmanagement von Massenspektren und Fragmentierungsbäumen mit BExIS.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2012.
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Martin Engler
Analysing copolymer synthesis by fitting a stochastic model to mass spectrometry data.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2011.
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Franziska Hufsky
Algorithm Engineering for the Center String Problem.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2010.
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Tamara Steijger
Automated Annotation of Fragmentation Patterns.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2009.
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Thomas Zichner
Analysis of Unknown Metabolites by Aligning MS Fragmentation Patterns.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2009.
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Birte Kehr
Structure Determination of Glycans by Analyzing Tandem Mass Spectra.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2008.
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Florian Rasche
Analysis of Metabolite Tandem Mass Spectra.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2008.
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Sebastian Briesemeister
Weighted Cluster Editing for clustering biological data.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2007.
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Juliane Damaris Klein
Problem Kernels For Genome Rearrangement Problems.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2007.
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Lars Steinbrück
Methoden des Maschinellen Lernens zur Vorhersage von Peak-Intensitäten in PMF-Massenspektren.
Diplomarbeit, Friedrich-Schiller-Universität Jena, 2007.
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