- Seminarleiter: Purva Kulkarni
- Termin: Di 16-18, SR 3423 EAP
Im Journal Club wird wöchentlich ein aktueller Artikel aus der bioinformatischen Forschung vorgestellt und diskutiert.
Details werden in der ersten Veranstaltung besprochen.
| Termin | Thema | Vortragender | Backup |
| 21.10. | Organisatorisches, Besprechen der Themen | ||
| 28.10. | |||
| 04.11. | Wang Y, Kora G, Bowen BP, Pan C MIDAS: A Database-Searching Algorithm for Metabolite Identification in Metabolomics Anal Chem, 86(19), 9496-503, 2014 |
Kai | – |
| 11.11. | Gupta N, Bandeira N, Keich U, Pevzner PA Target-decoy approach and false discovery rate: when things may go wrong J Am Soc Mass Spectrom, 22(7), 1111-20, 2011 |
Kerstin | – |
| 18.11. | Labarre A, Verwer S Merging Partially Labelled Trees: Hardness and a Declarative Programming Solution Computational Biology and Bioinformatics, IEEE/ACM Transactions, 11(2), 389-97, 2014 |
Tim | |
| 25.11. | Ma Y, Kind T, Yang D, Leon C, Fiehn O MS2Analyzer: A Software for Small Molecule Substructure Annotations from Accurate Tandem Mass Spectra Anal Chem, 2014 |
Marcus | |
| 02.12. | Pietro Franceschi and Ron Wehrens Self-organizing maps: A versatile tool for the automatic analysis of untargeted imaging datasets Proteomics, Volume 14, Issue 7-8, pages 853–861, April 2014 |
Purva | |
| 09.12. | (No journal club held) | ||
| 16.12. | (No journal club held) | ||
| 23.12. | Weihnachtspause | ||
| 30.12. | Weihnachtspause | ||
| 06.01. | Barry JA1, Robichaud G, Muddiman DC Mass recalibration of FT-ICR mass spectrometry imaging data using the average frequency shift of ambient ions. J Am Soc Mass Spectrom. 2013 Jul;24(7):1137-45. doi: 10.1007/s13361-013-0659-0. |
Purva | |
| 13.01. | Kind T, Liu KH, Lee do Y, DeFelice B, Meissen JK, Fiehn O LipidBlast in silico tandem mass spectrometry database for lipid identification Nat Methods, 10(8), 755-8, 2013 |
Franzi | |
| 20.01. | Yu T, Jones DP Improving peak detection in high-resolution LC/MS metabolomics data using preexisting knowledge and machine learning approach Bioinformatics, 30(20), 2941-8, 2014 |
Marvin | |
| 27.01. | Ling et. al. A new antibiotic kills pathogens without detectable resistance Nature (2015) doi:10.1038/nature14098 |
Sebastian | |
| 03.02. | Christian Bischof and Martin Buecker Computing Derivatives of Computer Programs Modern Methods and Algorithms of Quantum Chemistry, Proceedings, Second Edition, J. Grotendorst (Ed.), NIC Series, Vol. 3, ISBN 3-00-005834-6, pp. 315-327, 2000 |
Martin | |
| 10.02. | Master’s student Defense |
Further paper:
Dörr D, Stoye J, Böcker S, Jahn K
Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings
BMC Genomics, 15(Suppl 6):S2, 2014
Dittwald P, Nghia VT, Harris GA, Caprioli RM, Plase RV, Laukens K, Gambin A, Valkenborg D
Towards automated discrimination of lipids versus peptides from full scan mass spectra
EuPA Open Proteomics, 4, 87-100, 2014
Holton TA, Wilkinson M, Pisani D
The shape of modern tree reconstruction methods
Syst Biol, 63(3), 436-41, 2014
Kotera M, Tabei Y, Yamanishi Y, Muto A, Moriya Y, Tokimatsu T, Goto S
Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach
Bioinformatics, 30(12), i165-74, 2014